Crash in _PyObject_Malloc

Note: Executable of this report does not come from a package.
Similar reports
Problem #730318
Component
pymol
Last affected version
N/A
Executable
/usr/bin/python3.12
Error name
SIGSEGV 11
First occurrence
2024-08-27
Last occurrence
2025-01-10
Unique reports
2
Quality
-122

Statistics

Operating system Unique / Total count
Fedora 40 2 / 2
Operating system Count
Fedora 40 2
Architecture Count
x86_64 2
Related packages Count
python3 2
 0:3.12.4-1.fc40 1
 0:3.12.8-2.fc40 1
llvm-libs 2
 0:18.1.6-2.fc40 1
 0:18.1.8-2.fc40 1

Packages names with count less than the total count of reports are most probably not the cause of the problem.

History

Daily:

Weekly:

Monthly:

No reports in the last 20 days.

No reports in the last 20 weeks.

No reports in the last 20 months.

History

Daily:

Weekly:

Monthly:

No reports in the last 20 days.

No reports in the last 20 weeks.

No reports in the last 20 months.


Backtrace

Frame # Function Binary Source or offset Line
1
_PyObject_Malloc
/lib64/libpython3.12.so.1.0 0x158e2f
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
2
PyUnicode_New
/lib64/libpython3.12.so.1.0 0x15fd5d
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
3
unicode_decode_utf8
/lib64/libpython3.12.so.1.0 0x15f12a
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
4
CmdFindMolfilePlugin(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.12/site-packages/pymol/_cmd.cpython-312-x86_64-linux-gnu.so 0x3a7db6
Build id: d341423c4a4ea070b67bd2cf72a637a28335360c 		-
5
cfunction_call
/lib64/libpython3.12.so.1.0 0x191138
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
6
_PyObject_MakeTpCall
/lib64/libpython3.12.so.1.0 0x169476
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
7
_PyEval_EvalFrameDefault
/lib64/libpython3.12.so.1.0 0x171ea5
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
8
_PyObject_CallFunctionVa
/lib64/libpython3.12.so.1.0 0x1665f8
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
9
PyObject_CallFunction
/lib64/libpython3.12.so.1.0 0x166522
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
10
PFlushFast(PyMOLGlobals*)
/usr/lib64/python3.12/site-packages/pymol/_cmd.cpython-312-x86_64-linux-gnu.so 0x1c8fe7
Build id: d341423c4a4ea070b67bd2cf72a637a28335360c 		-
11
CmdFlushNow(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.12/site-packages/pymol/_cmd.cpython-312-x86_64-linux-gnu.so 0x3acebc
Build id: d341423c4a4ea070b67bd2cf72a637a28335360c 		-
12
cfunction_call
/lib64/libpython3.12.so.1.0 0x191138
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
13
_PyObject_MakeTpCall
/lib64/libpython3.12.so.1.0 0x169476
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
14
_PyEval_EvalFrameDefault
/lib64/libpython3.12.so.1.0 0x171ea5
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
15
method_vectorcall
/lib64/libpython3.12.so.1.0 0x1b0738
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
16
PyObject_Vectorcall
/lib64/libpython3.12.so.1.0 0x188b7c
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
17
_PyEval_EvalFrameDefault
/lib64/libpython3.12.so.1.0 0x171ea5
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
18
PyQtSlot::invoke(void**, _object*, void*, bool) const
/usr/lib64/python3.12/site-packages/PyQt5/QtCore.abi3.so 0x1b8b9f
Build id: e0b23c92a17be3eb2fc2da7b8fbc0bda9521651f 		-
19
PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)
/usr/lib64/python3.12/site-packages/PyQt5/QtCore.abi3.so 0x1bd29e
Build id: e0b23c92a17be3eb2fc2da7b8fbc0bda9521651f 		-
20
void doActivate<false>(QObject*, int, void**)
/lib64/libQt5Core.so.5 0x2ebe83
Build id: cbe9627b0e3c019c0832a55096a129215d44377b 		-
21
QAbstractButton::clicked(bool)
/lib64/libQt5Widgets.so.5 0x28a6f4
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
22
QAbstractButtonPrivate::emitClicked()
/lib64/libQt5Widgets.so.5 0x28a9df
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
23
QAbstractButtonPrivate::click()
/lib64/libQt5Widgets.so.5 0x28c37f
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
24
QAbstractButton::mouseReleaseEvent(QMouseEvent*)
/lib64/libQt5Widgets.so.5 0x28c5ab
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
25
sipQPushButton::mouseReleaseEvent(QMouseEvent*)
/usr/lib64/python3.12/site-packages/PyQt5/QtWidgets.abi3.so 0x2cbe33
Build id: 0a68690ab8cc42e0605518aefb8d499e03f6039a 		-
26
QWidget::event(QEvent*)
/lib64/libQt5Widgets.so.5 0x1d1598
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
27
sipQPushButton::event(QEvent*)
/usr/lib64/python3.12/site-packages/PyQt5/QtWidgets.abi3.so 0x2cf78b
Build id: 0a68690ab8cc42e0605518aefb8d499e03f6039a 		-
28
QApplicationPrivate::notify_helper(QObject*, QEvent*)
/lib64/libQt5Widgets.so.5 0x18cc35
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
29
QApplication::notify(QObject*, QEvent*)
/lib64/libQt5Widgets.so.5 0x19540f
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
30
sipQApplication::notify(QObject*, QEvent*)
/usr/lib64/python3.12/site-packages/PyQt5/QtWidgets.abi3.so 0x301036
Build id: 0a68690ab8cc42e0605518aefb8d499e03f6039a 		-
31
QCoreApplication::notifyInternal2(QObject*, QEvent*)
/lib64/libQt5Core.so.5 0x2b7178
Build id: cbe9627b0e3c019c0832a55096a129215d44377b 		-
32
QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer<QWidget>&, bool, bool)
/lib64/libQt5Widgets.so.5 0x19328d
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
33
QWidgetWindow::handleMouseEvent(QMouseEvent*)
/lib64/libQt5Widgets.so.5 0x1ec007
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
34
QWidgetWindow::event(QEvent*)
/lib64/libQt5Widgets.so.5 0x1ef71f
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
35
QApplicationPrivate::notify_helper(QObject*, QEvent*)
/lib64/libQt5Widgets.so.5 0x18cc35
Build id: 7e21d3a186390804fdc5d6972a897f2a6db667a4 		-
36
sipQApplication::notify(QObject*, QEvent*)
/usr/lib64/python3.12/site-packages/PyQt5/QtWidgets.abi3.so 0x301036
Build id: 0a68690ab8cc42e0605518aefb8d499e03f6039a 		-
37
QCoreApplication::notifyInternal2(QObject*, QEvent*)
/lib64/libQt5Core.so.5 0x2b7178
Build id: cbe9627b0e3c019c0832a55096a129215d44377b 		-
38
QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*)
/lib64/libQt5Gui.so.5 0x15d3f7
Build id: c09f1fa05ff2307c0fe81246a5b9d28c64a9660b 		-
39
QWindowSystemInterface::sendWindowSystemEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQt5Gui.so.5 0x139d5c
Build id: c09f1fa05ff2307c0fe81246a5b9d28c64a9660b 		-
40
userEventSourceDispatch(_GSource*, int (*)(void*), void*)
/lib64/libQt5WaylandClient.so.5 0xb3ba4
Build id: a0efeb3b2e2097819825fd38642e9eecc5eac042 		-
41
g_main_context_dispatch_unlocked.lto_priv.0
/lib64/libglib-2.0.so.0 0x5ce8c
Build id: 36b60dbd02e796145a982d0151ce37202ec05649 		-
42
g_main_context_iterate_unlocked.isra.0
/lib64/libglib-2.0.so.0 0xbec98
Build id: 36b60dbd02e796145a982d0151ce37202ec05649 		-
43
g_main_context_iteration
/lib64/libglib-2.0.so.0 0x5e383
Build id: 36b60dbd02e796145a982d0151ce37202ec05649 		-
44
QEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQt5Core.so.5 0x30bbed
Build id: cbe9627b0e3c019c0832a55096a129215d44377b 		-
45
QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQt5Core.so.5 0x2b5adb
Build id: cbe9627b0e3c019c0832a55096a129215d44377b 		-
46
QCoreApplication::exec()
/lib64/libQt5Core.so.5 0x2bdf46
Build id: cbe9627b0e3c019c0832a55096a129215d44377b 		-
47
meth_QApplication_exec_.lto_priv.0
/usr/lib64/python3.12/site-packages/PyQt5/QtWidgets.abi3.so 0x2fbff5
Build id: 0a68690ab8cc42e0605518aefb8d499e03f6039a 		-
48
cfunction_call
/lib64/libpython3.12.so.1.0 0x191138
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
49
_PyObject_MakeTpCall
/lib64/libpython3.12.so.1.0 0x169476
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
50
_PyEval_EvalFrameDefault
/lib64/libpython3.12.so.1.0 0x171ea5
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
51
PyEval_EvalCode
/lib64/libpython3.12.so.1.0 0x1fdef4
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
52
run_eval_code_obj
/lib64/libpython3.12.so.1.0 0x22215a
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
53
run_mod
/lib64/libpython3.12.so.1.0 0x21c8be
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
54
pyrun_file
/lib64/libpython3.12.so.1.0 0x2370f3
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
55
_PyRun_SimpleFileObject
/lib64/libpython3.12.so.1.0 0x2363ec
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
56
_PyRun_AnyFileObject
/lib64/libpython3.12.so.1.0 0x23600f
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
57
Py_RunMain
/lib64/libpython3.12.so.1.0 0x22e7c3
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
58
Py_BytesMain
/lib64/libpython3.12.so.1.0 0x1e606c
Build id: 4eb4ec979b0f0c63567af48fe88d1591c571bad5 		-
59
__libc_start_call_main
/lib64/libc.so.6 0x2a088
Build id: 8f53abaad945a669f2bdcd25f471d80e077568ef 		-
60
__libc_start_main@@GLIBC_2.34
/lib64/libc.so.6 0x2a14b
Build id: 8f53abaad945a669f2bdcd25f471d80e077568ef 		-
61
_start
/usr/bin/python3.12 0x1095
Build id: 3382022a8b02ec2cee9e04ba8326741e93cf928e 		-