Crash in unicode_decode_utf8

Similar reports
Problem #734092
Component
pymol
Last affected version
0:2.5.0-12.fc41
Executable
/usr/bin/python3.13
Error name
SIGSEGV 11
First occurrence
2025-04-03
Last occurrence
2026-09-10
Unique reports
9
Quality
-126

Statistics

Operating system Unique / Total count
Fedora 41 9 / 14
Operating system Count
Fedora 41 14
Architecture Count
x86_64 14
Related packages Count
pymol 14
 0:2.5.0-12.fc41 14
python3 14
 0:3.13.3-2.fc41 6
 0:3.13.2-1.fc41 6
 0:3.13.7-1.fc41 1
 0:3.13.9-1.fc41 1
sqlite-libs 4
 0:3.46.1-2.fc41 4
Show more… (4)
llvm-libs 2
 0:19.1.7-5.fc41 1
 0:19.1.7-3.fc41 1
qt 2
 1:4.8.7-77.fc41 2
librsvg2 1
 0:2.59.2-1.fc41 1
ibus-qt 1
 0:1.3.4-12.fc41 1

Packages names with count less than the total count of reports are most probably not the cause of the problem.

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Backtrace

Frame # Function Binary Source or offset Line
1
unicode_decode_utf8
/lib64/libpython3.13.so.1.0 0x129aa1
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
2
CmdGetUnusedName(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3b2786
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
3
cfunction_call
/lib64/libpython3.13.so.1.0 0x174cee
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
4
_PyObject_MakeTpCall
/lib64/libpython3.13.so.1.0 0x13b0cb
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
5
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x1560b5
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
6
PyEval_EvalCode
/lib64/libpython3.13.so.1.0 0x22462b
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
7
builtin_exec
/lib64/libpython3.13.so.1.0 0x23f874
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
8
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x153b77
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
9
PyObject_CallFunction
/lib64/libpython3.13.so.1.0 0x135df4
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
10
PFlush(PyMOLGlobals*)
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x1d2e12
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
11
CPopUp::release(int, int, int, int)
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3cd727
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
12
OrthoButton(PyMOLGlobals*, int, int, int, int, int)
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x1d0042
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
13
Cmd_Button(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3be6c5
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
14
cfunction_call
/lib64/libpython3.13.so.1.0 0x174cee
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
15
_PyObject_MakeTpCall
/lib64/libpython3.13.so.1.0 0x13b0cb
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
16
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x152f06
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
17
method_vectorcall
/lib64/libpython3.13.so.1.0 0x1add4d
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
18
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x1575f0
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
19
method_vectorcall
/lib64/libpython3.13.so.1.0 0x1add4d
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
20
call_method
/usr/lib64/python3.13/site-packages/PyQt4/sip.so 0x1243e
Build id: 85c3f06ea511aa4575cb022b3012ee89dec64c63 		-
21
sip_api_call_procedure_method
/usr/lib64/python3.13/site-packages/PyQt4/sip.so 0x12539
Build id: 85c3f06ea511aa4575cb022b3012ee89dec64c63 		-
22
sipQGLWidget::mouseReleaseEvent(QMouseEvent*)
/usr/lib64/python3.13/site-packages/PyQt4/QtOpenGL.so 0x2157e
Build id: a296f52cb375cd2e164763ae89e0cb1f4aff205a 		-
23
QWidget::event(QEvent*)
/lib64/libQtGui.so.4 0x2c3a38
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
24
meth_QGLWidget_event.lto_priv.0
/usr/lib64/python3.13/site-packages/PyQt4/QtOpenGL.so 0x20e5d
Build id: a296f52cb375cd2e164763ae89e0cb1f4aff205a 		-
25
cfunction_call
/lib64/libpython3.13.so.1.0 0x174cee
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
26
_PyObject_MakeTpCall
/lib64/libpython3.13.so.1.0 0x13b0cb
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
27
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x152f06
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
28
method_vectorcall
/lib64/libpython3.13.so.1.0 0x1add4d
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
29
call_method
/usr/lib64/python3.13/site-packages/PyQt4/sip.so 0x1243e
Build id: 85c3f06ea511aa4575cb022b3012ee89dec64c63 		-
30
sip_api_call_method.lto_priv.0
/usr/lib64/python3.13/site-packages/PyQt4/sip.so 0x126c0
Build id: 85c3f06ea511aa4575cb022b3012ee89dec64c63 		-
31
sipVH_QtOpenGL_32(PyGILState_STATE, void (*)(_sipSimpleWrapper*, PyGILState_STATE), _sipSimpleWrapper*, _object*, QEvent*) [clone .constprop.0]
/usr/lib64/python3.13/site-packages/PyQt4/QtOpenGL.so 0x2a673
Build id: a296f52cb375cd2e164763ae89e0cb1f4aff205a 		-
32
sipQGLWidget::event(QEvent*)
/usr/lib64/python3.13/site-packages/PyQt4/QtOpenGL.so 0x20cbe
Build id: a296f52cb375cd2e164763ae89e0cb1f4aff205a 		-
33
QApplicationPrivate::notify_helper(QObject*, QEvent*)
/lib64/libQtGui.so.4 0x26ba73
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
34
QApplication::notify(QObject*, QEvent*)
/lib64/libQtGui.so.4 0x273449
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
35
sipQApplication::notify(QObject*, QEvent*)
/usr/lib64/python3.13/site-packages/PyQt4/QtGui.so 0x46f95e
Build id: 20be0529936eca835a00f23f612cfb2f408b0b0c 		-
36
QCoreApplication::notifyInternal(QObject*, QEvent*)
/lib64/libQtCore.so.4 0x1b13db
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
37
QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer<QWidget>&, bool)
/lib64/libQtGui.so.4 0x272484
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
38
QETWidget::translateMouseEvent(_XEvent const*)
/lib64/libQtGui.so.4 0x2ed43a
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
39
QApplication::x11ProcessEvent(_XEvent*)
/lib64/libQtGui.so.4 0x2ec5de
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
40
x11EventSourceDispatch(_GSource*, int (*)(void*), void*)
/lib64/libQtGui.so.4 0x315251
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
41
g_main_context_dispatch_unlocked.lto_priv.0
/lib64/libglib-2.0.so.0 0x4028c
Build id: 22d79f4920ad3a59cb8611276e6b6b95da3b654b 		-
42
g_main_context_iterate_unlocked.isra.0
/lib64/libglib-2.0.so.0 0xa08b8
Build id: 22d79f4920ad3a59cb8611276e6b6b95da3b654b 		-
43
g_main_context_iteration
/lib64/libglib-2.0.so.0 0x41783
Build id: 22d79f4920ad3a59cb8611276e6b6b95da3b654b 		-
44
QEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtCore.so.4 0x1e0499
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
45
QGuiEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtGui.so.4 0x3153ec
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
46
QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtCore.so.4 0x1afc74
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
47
QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtCore.so.4 0x1aff95
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
48
QCoreApplication::exec()
/lib64/libQtCore.so.4 0x1b579d
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
49
meth_QApplication_exec_.lto_priv.0
/usr/lib64/python3.13/site-packages/PyQt4/QtGui.so 0x470da5
Build id: 20be0529936eca835a00f23f612cfb2f408b0b0c 		-
50
cfunction_call
/lib64/libpython3.13.so.1.0 0x174cee
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
51
_PyObject_MakeTpCall
/lib64/libpython3.13.so.1.0 0x13b0cb
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
52
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x1560b5
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
53
PyEval_EvalCode
/lib64/libpython3.13.so.1.0 0x22462b
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
54
run_eval_code_obj
/lib64/libpython3.13.so.1.0 0x247740
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
55
run_mod
/lib64/libpython3.13.so.1.0 0x241963
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
56
pyrun_file
/lib64/libpython3.13.so.1.0 0x262cd6
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
57
_PyRun_SimpleFileObject
/lib64/libpython3.13.so.1.0 0x2623bf
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
58
_PyRun_AnyFileObject
/lib64/libpython3.13.so.1.0 0x2621e1
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
59
Py_RunMain
/lib64/libpython3.13.so.1.0 0x25a828
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
60
Py_BytesMain
/lib64/libpython3.13.so.1.0 0x21379c
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
61
__libc_start_call_main
/lib64/libc.so.6 0x3248
Build id: f83d43b9b4b0ed5c2bd0a1613bf33e08ee054c93 		-
62
__libc_start_main@@GLIBC_2.34
/lib64/libc.so.6 0x330b
Build id: f83d43b9b4b0ed5c2bd0a1613bf33e08ee054c93 		-
63
_start
/usr/bin/python3.13 0x1095
Build id: a2aa57a496e96b8651dc73c8ce58be9f06fed3ff 		-