Crash in unicode_decode_utf8

Similar reports
Problem #824145
Component
pymol
Last affected version
0:2.5.0-12.fc41
Executable
/usr/bin/python3.13
Error name
SIGSEGV 11
First occurrence
2025-06-25
Last occurrence
2026-10-01
Unique reports
3
Quality
-94

Statistics

Operating system Unique / Total count
Fedora 41 3 / 5
Operating system Count
Fedora 41 5
Architecture Count
x86_64 5
Related packages Count
python3 5
 0:3.13.9-1.fc41 4
 0:3.13.2-1.fc41 1
sqlite-libs 5
 0:3.46.1-5.fc41 4
 0:3.46.1-2.fc41 1
pymol 5
 0:2.5.0-12.fc41 5
Show more… (15)
librsvg2 4
 0:2.59.2-1.fc41 4
mesa-dri-drivers 2
 0:25.0.7-3.fc41 2
llvm-libs 2
 0:19.1.7-5.fc41 2
xorg-x11-drv-nvidia-libs 2
 3:580.95.05-1.fc41 2
python3-libs 1
 0:3.13.2-1.fc41 1
liblerc 1
 0:4.0.0-7.fc41 1
google-carlito-fonts 1
 0:1.103-0.25.20130920.fc41 1
google-droid-sans-fonts 1
 0:20200215-21.fc41 1
google-noto-sans-math-fonts 1
 0:20240701-2.fc41 1
sil-nuosu-fonts 1
 0:2.200-11.fc41 1
sil-padauk-fonts 1
 0:3.003-15.fc41 1
sil-mingzat-fonts 1
 0:1.100-7.fc41 1
google-noto-sans-vf-fonts 1
 0:20240701-2.fc41 1
google-noto-sans-arabic-vf-fonts 1
 0:20240701-2.fc41 1
dejavu-sans-fonts 1
 0:2.37-24.fc41 1

Packages names with count less than the total count of reports are most probably not the cause of the problem.

History

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No reports in the last 20 days.

History

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No reports in the last 20 days.


Backtrace

Frame # Function Binary Source or offset Line
1
unicode_decode_utf8
/lib64/libpython3.13.so.1.0 0x129aa1
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
2
CmdFindMolfilePlugin(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3ae006
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
3
cfunction_call
/lib64/libpython3.13.so.1.0 0x174cee
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
4
_PyObject_MakeTpCall
/lib64/libpython3.13.so.1.0 0x13b0cb
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
5
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x1560b5
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
6
method_vectorcall
/lib64/libpython3.13.so.1.0 0x1adf62
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
7
qtlib_invoke_slot(_sipSlot const*, _object*, int)
/usr/lib64/python3.13/site-packages/PyQt4/QtCore.so 0x175068
Build id: 3d1f7259665bc656e1c33a3e678f5c5314dd9a6c 		-
8
PyQtProxy::invokeSlot(qpycore_slot const&, void**, int)
/usr/lib64/python3.13/site-packages/PyQt4/QtCore.so 0x16f90f
Build id: 3d1f7259665bc656e1c33a3e678f5c5314dd9a6c 		-
9
PyQtProxy::unislot(void**)
/usr/lib64/python3.13/site-packages/PyQt4/QtCore.so 0x16fc95
Build id: 3d1f7259665bc656e1c33a3e678f5c5314dd9a6c 		-
10
PyQtProxy::qt_metacall(QMetaObject::Call, int, void**)
/usr/lib64/python3.13/site-packages/PyQt4/QtCore.so 0x17092d
Build id: 3d1f7259665bc656e1c33a3e678f5c5314dd9a6c 		-
11
QMetaObject::activate(QObject*, QMetaObject const*, int, void**)
/lib64/libQtCore.so.4 0x1c570b
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
12
QAction::triggered(bool)
/lib64/libQtGui.so.4 0x264f54
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
13
QAction::activate(QAction::ActionEvent)
/lib64/libQtGui.so.4 0x266df3
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
14
QMenuPrivate::activateCausedStack(QList<QPointer<QWidget> > const&, QAction*, QAction::ActionEvent, bool)
/lib64/libQtGui.so.4 0x6cbebc
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
15
QMenuPrivate::activateAction(QAction*, QAction::ActionEvent, bool)
/lib64/libQtGui.so.4 0x6d0d02
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
16
QWidget::event(QEvent*)
/lib64/libQtGui.so.4 0x2c3a38
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
17
QApplicationPrivate::notify_helper(QObject*, QEvent*)
/lib64/libQtGui.so.4 0x26ba73
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
18
QApplication::notify(QObject*, QEvent*)
/lib64/libQtGui.so.4 0x273449
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
19
sipQApplication::notify(QObject*, QEvent*)
/usr/lib64/python3.13/site-packages/PyQt4/QtGui.so 0x46f95e
Build id: 20be0529936eca835a00f23f612cfb2f408b0b0c 		-
20
QCoreApplication::notifyInternal(QObject*, QEvent*)
/lib64/libQtCore.so.4 0x1b13db
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
21
QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer<QWidget>&, bool)
/lib64/libQtGui.so.4 0x272484
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
22
QETWidget::translateMouseEvent(_XEvent const*)
/lib64/libQtGui.so.4 0x2ed71f
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
23
QApplication::x11ProcessEvent(_XEvent*)
/lib64/libQtGui.so.4 0x2ec5de
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
24
x11EventSourceDispatch(_GSource*, int (*)(void*), void*)
/lib64/libQtGui.so.4 0x315251
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
25
g_main_context_dispatch_unlocked.lto_priv.0
/lib64/libglib-2.0.so.0 0x4028c
Build id: 865a88f51bbf48869c7166397a8c69259849ea68 		-
26
g_main_context_iterate_unlocked.isra.0
/lib64/libglib-2.0.so.0 0xa07b8
Build id: 865a88f51bbf48869c7166397a8c69259849ea68 		-
27
g_main_context_iteration
/lib64/libglib-2.0.so.0 0x41783
Build id: 865a88f51bbf48869c7166397a8c69259849ea68 		-
28
QEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtCore.so.4 0x1e0499
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
29
QGuiEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtGui.so.4 0x3153ec
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
30
QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtCore.so.4 0x1afc74
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
31
QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtCore.so.4 0x1aff95
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
32
QCoreApplication::exec()
/lib64/libQtCore.so.4 0x1b579d
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
33
meth_QApplication_exec_.lto_priv.0
/usr/lib64/python3.13/site-packages/PyQt4/QtGui.so 0x470da5
Build id: 20be0529936eca835a00f23f612cfb2f408b0b0c 		-
34
cfunction_call
/lib64/libpython3.13.so.1.0 0x174cee
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
35
_PyObject_MakeTpCall
/lib64/libpython3.13.so.1.0 0x13b0cb
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
36
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x1560b5
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
37
PyEval_EvalCode
/lib64/libpython3.13.so.1.0 0x22462b
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
38
run_eval_code_obj
/lib64/libpython3.13.so.1.0 0x247740
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
39
run_mod
/lib64/libpython3.13.so.1.0 0x241963
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
40
pyrun_file
/lib64/libpython3.13.so.1.0 0x262cd6
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
41
_PyRun_SimpleFileObject
/lib64/libpython3.13.so.1.0 0x2623bf
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
42
_PyRun_AnyFileObject
/lib64/libpython3.13.so.1.0 0x2621e1
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
43
Py_RunMain
/lib64/libpython3.13.so.1.0 0x25a828
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
44
Py_BytesMain
/lib64/libpython3.13.so.1.0 0x21379c
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
45
__libc_start_call_main
/lib64/libc.so.6 0x3248
Build id: f83d43b9b4b0ed5c2bd0a1613bf33e08ee054c93 		-
46
__libc_start_main@@GLIBC_2.34
/lib64/libc.so.6 0x330b
Build id: f83d43b9b4b0ed5c2bd0a1613bf33e08ee054c93 		-
47
_start
/usr/bin/python3.13 0x1095
Build id: a2aa57a496e96b8651dc73c8ce58be9f06fed3ff 		-