Crash in unicode_decode_utf8

Similar reports
Problem #768704
Component
pymol
Last affected version
0:2.5.0-12.fc41
Executable
/usr/bin/python3.13
Error name
SIGSEGV 11
First occurrence
2025-07-18
Last occurrence
2026-07-01
Unique reports
4
Quality
-128

Statistics

Operating system Unique / Total count
Fedora 41 4 / 6
Operating system Count
Fedora 41 6
Architecture Count
x86_64 6
Related packages Count
python3 6
 0:3.13.5-1.fc41 2
 0:3.13.2-1.fc41 2
 0:3.13.3-2.fc41 1
 0:3.13.9-1.fc41 1
pymol 6
 0:2.5.0-12.fc41 6
librsvg2 4
 0:2.59.2-1.fc41 4
Show more… (9)
qt 2
 1:4.8.7-77.fc41 2
dbus-libs 2
 1:1.14.10-4.fc41 2
systemd-libs 2
 0:256.12-1.fc41 2
abattis-cantarell-fonts 1
 0:0.301-13.fc41 1
gvfs-client 1
 0:1.56.1-1.fc41 1
cairo-gobject 1
 0:1.18.2-2.fc41 1
rsvg-pixbuf-loader 1
 0:2.59.2-1.fc41 1
libtiff 1
 0:4.6.0-6.fc41 1
liblerc 1
 0:4.0.0-8.fc41 1

Packages names with count less than the total count of reports are most probably not the cause of the problem.

History

Daily:

Weekly:

Monthly:

History

Daily:

Weekly:

Monthly:


Backtrace

Frame # Function Binary Source or offset Line
1
unicode_decode_utf8
/lib64/libpython3.13.so.1.0 0x12be71
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
2
CmdGetUnusedName(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3b2786
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
3
cfunction_call
/lib64/libpython3.13.so.1.0 0x16f87e
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
4
_PyObject_MakeTpCall
/lib64/libpython3.13.so.1.0 0x13aacb
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
5
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x14cb1c
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
6
PyObject_CallFunction
/lib64/libpython3.13.so.1.0 0x136464
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
7
PFlushFast(PyMOLGlobals*)
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x1cbaf7
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
8
CmdFlushNow(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3b318c
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
9
cfunction_call
/lib64/libpython3.13.so.1.0 0x16f87e
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
10
_PyObject_MakeTpCall
/lib64/libpython3.13.so.1.0 0x13aacb
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
11
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x14d14f
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
12
method_vectorcall
/lib64/libpython3.13.so.1.0 0x1a76b1
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
13
PyObject_Vectorcall
/lib64/libpython3.13.so.1.0 0x13cdd7
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
14
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x14cb1c
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
15
PyEval_EvalCode
/lib64/libpython3.13.so.1.0 0x21f03b
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
16
builtin_exec
/lib64/libpython3.13.so.1.0 0x23b324
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
17
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x14dd74
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
18
PyObject_CallFunction
/lib64/libpython3.13.so.1.0 0x136464
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
19
PFlush(PyMOLGlobals*)
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x1d2e12
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
20
OrthoKey(PyMOLGlobals*, unsigned char, int, int, int)
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x1d317e
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
21
PyMOL_Key
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3d388a
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
22
Cmd_Button(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3be6c5
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
23
cfunction_call
/lib64/libpython3.13.so.1.0 0x16f87e
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
24
_PyObject_MakeTpCall
/lib64/libpython3.13.so.1.0 0x13aacb
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
25
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x14d14f
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
26
method_vectorcall
/lib64/libpython3.13.so.1.0 0x1a756b
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
27
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x1515f3
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
28
method_vectorcall
/lib64/libpython3.13.so.1.0 0x1a756b
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
29
call_method
/usr/lib64/python3.13/site-packages/PyQt4/sip.so 0x1243e
Build id: 85c3f06ea511aa4575cb022b3012ee89dec64c63 		-
30
sip_api_call_procedure_method
/usr/lib64/python3.13/site-packages/PyQt4/sip.so 0x12539
Build id: 85c3f06ea511aa4575cb022b3012ee89dec64c63 		-
31
sipQMainWindow::keyPressEvent(QKeyEvent*)
/usr/lib64/python3.13/site-packages/PyQt4/QtGui.so 0x2cfad4
Build id: 20be0529936eca835a00f23f612cfb2f408b0b0c 		-
32
QWidget::event(QEvent*)
/lib64/libQtGui.so.4 0x2c47ff
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
33
sipQMainWindow::event(QEvent*)
/usr/lib64/python3.13/site-packages/PyQt4/QtGui.so 0x2d4093
Build id: 20be0529936eca835a00f23f612cfb2f408b0b0c 		-
34
QApplicationPrivate::notify_helper(QObject*, QEvent*)
/lib64/libQtGui.so.4 0x26ba73
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
35
QApplication::notify(QObject*, QEvent*)
/lib64/libQtGui.so.4 0x273dad
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
36
sipQApplication::notify(QObject*, QEvent*)
/usr/lib64/python3.13/site-packages/PyQt4/QtGui.so 0x46f95e
Build id: 20be0529936eca835a00f23f612cfb2f408b0b0c 		-
37
QCoreApplication::notifyInternal(QObject*, QEvent*)
/lib64/libQtCore.so.4 0x1b13db
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
38
QKeyMapper::sendKeyEvent(QWidget*, bool, QEvent::Type, int, QFlags<Qt::KeyboardModifier>, QString const&, bool, int, unsigned int, unsigned int, unsigned int, bool*)
/lib64/libQtGui.so.4 0x312bd1
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
39
QKeyMapperPrivate::translateKeyEvent(QWidget*, _XEvent const*, bool)
/lib64/libQtGui.so.4 0x312ea7
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
40
QApplication::x11ProcessEvent(_XEvent*)
/lib64/libQtGui.so.4 0x2ec02e
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
41
x11EventSourceDispatch(_GSource*, int (*)(void*), void*)
/lib64/libQtGui.so.4 0x315251
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
42
g_main_context_dispatch_unlocked.lto_priv.0
/lib64/libglib-2.0.so.0 0x4028c
Build id: 22d79f4920ad3a59cb8611276e6b6b95da3b654b 		-
43
g_main_context_iterate_unlocked.isra.0
/lib64/libglib-2.0.so.0 0xa08b8
Build id: 22d79f4920ad3a59cb8611276e6b6b95da3b654b 		-
44
g_main_context_iteration
/lib64/libglib-2.0.so.0 0x41783
Build id: 22d79f4920ad3a59cb8611276e6b6b95da3b654b 		-
45
QEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtCore.so.4 0x1e0499
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
46
QGuiEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtGui.so.4 0x3153ec
Build id: cb7276fe35cc3ce78c6b833c879335cb90f04b40 		-
47
QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtCore.so.4 0x1afc74
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
48
QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQtCore.so.4 0x1aff95
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
49
QCoreApplication::exec()
/lib64/libQtCore.so.4 0x1b579d
Build id: 7a9a4aee5d07419e2e24dacaa3a6b6c0c6598f95 		-
50
meth_QApplication_exec_.lto_priv.0
/usr/lib64/python3.13/site-packages/PyQt4/QtGui.so 0x470da5
Build id: 20be0529936eca835a00f23f612cfb2f408b0b0c 		-
51
cfunction_call
/lib64/libpython3.13.so.1.0 0x16f87e
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
52
_PyObject_MakeTpCall
/lib64/libpython3.13.so.1.0 0x13aacb
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
53
_PyEval_EvalFrameDefault
/lib64/libpython3.13.so.1.0 0x14cb1c
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
54
PyEval_EvalCode
/lib64/libpython3.13.so.1.0 0x21f03b
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
55
run_eval_code_obj
/lib64/libpython3.13.so.1.0 0x25dd23
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
56
run_mod
/lib64/libpython3.13.so.1.0 0x25b343
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
57
pyrun_file
/lib64/libpython3.13.so.1.0 0x257dd6
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
58
_PyRun_SimpleFileObject
/lib64/libpython3.13.so.1.0 0x257a4d
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
59
_PyRun_AnyFileObject
/lib64/libpython3.13.so.1.0 0x257681
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
60
Py_RunMain
/lib64/libpython3.13.so.1.0 0x255c1a
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
61
Py_BytesMain
/lib64/libpython3.13.so.1.0 0x20c1ac
Build id: 1c4c8d9438e8b8152cd998abe09c43e52d4df6c4 		-
62
__libc_start_call_main
/lib64/libc.so.6 0x3248
Build id: b840d32d15506ed2f29610c7f512d9084f2d7d69 		-
63
__libc_start_main@@GLIBC_2.34
/lib64/libc.so.6 0x330b
Build id: b840d32d15506ed2f29610c7f512d9084f2d7d69 		-
64
_start
/usr/bin/python3.13 0x1095
Build id: 5fc1b666458cdf5cdce567f5d646ace7be1d64cc 		-