Crash in __pthread_kill_implementation

Similar reports
Problem #806179
Component
bowtie2
Last affected version
0:2.5.1-4.fc40
Executable
/usr/bin/bowtie2-align-s
Error name
SIGABRT 6
First occurrence
2025-08-28
Last occurrence
2026-01-20
Unique reports
2
Quality
-22

Statistics

Operating system Unique / Total count
Fedora 40 2 / 4
Operating system Count
Fedora 40 4
Architecture Count
x86_64 4
Related packages Count
bowtie2 4
 0:2.5.1-4.fc40 4
glibc 4
 0:2.39-38.fc40 4
zlib-ng-compat 4
 0:2.1.7-2.fc40 4
Show more… (2)
libstdc++ 4
 0:14.2.1-3.fc40 4
libgcc 4
 0:14.2.1-3.fc40 4

Packages names with count less than the total count of reports are most probably not the cause of the problem.

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Backtrace

Frame # Function Binary Source or offset Line
1
__pthread_kill_implementation
/lib64/libc.so.6 0x9a034
Build id: fc3b3c4da3283cd44c006682a30b9df3242de053 		-
2
raise
/lib64/libc.so.6 0x40f1e
Build id: fc3b3c4da3283cd44c006682a30b9df3242de053 		-
3
abort
/lib64/libc.so.6 0x28902
Build id: fc3b3c4da3283cd44c006682a30b9df3242de053 		-
4
__gnu_cxx::__verbose_terminate_handler() [clone .cold]
/lib64/libstdc++.so.6 0xa5da9
Build id: efdde18722aa72a0a779270371aeee5a9f6ddf87 		-
5
__cxxabiv1::__terminate(void (*)())
/lib64/libstdc++.so.6 0xb7c4c
Build id: efdde18722aa72a0a779270371aeee5a9f6ddf87 		-
6
std::unexpected()
/lib64/libstdc++.so.6 0xa5951
Build id: efdde18722aa72a0a779270371aeee5a9f6ddf87 		-
7
void driver<SString<char> >(char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) [clone .constprop.0] [clone .cold]
/usr/bin/bowtie2-align-s 0xb47a
Build id: 327837499b77bda153ea3705cbc9f4d9f13b69e1 		-
8
bowtie
/usr/bin/bowtie2-align-s 0x4729b
Build id: 327837499b77bda153ea3705cbc9f4d9f13b69e1 		-
9
__libc_start_call_main
/lib64/libc.so.6 0x2a088
Build id: fc3b3c4da3283cd44c006682a30b9df3242de053 		-
10
__libc_start_main@@GLIBC_2.34
/lib64/libc.so.6 0x2a14b
Build id: fc3b3c4da3283cd44c006682a30b9df3242de053 		-
11
_start
/usr/bin/bowtie2-align-s 0xe515
Build id: 327837499b77bda153ea3705cbc9f4d9f13b69e1 		-