Crash in unicode_decode_utf8

Similar reports
Problem #803893
Component
pymol
Last affected version
0:2.5.0-12.fc41
Executable
/usr/bin/python3.13
Error name
SIGSEGV 11
First occurrence
2026-01-21
Last occurrence
2026-01-21
Unique reports
2
Quality
-94

Statistics

Operating system Unique / Total count
Fedora 41 2 / 3
Operating system Count
Fedora 41 3
Architecture Count
x86_64 3
Related packages Count
python3 3
 0:3.13.2-1.fc41 3
tcl 3
 1:8.6.14-5.fc41 3
tk 3
 1:8.6.14-2.fc41 3
pymol 3
 0:2.5.0-12.fc41 3

Packages names with count less than the total count of reports are most probably not the cause of the problem.

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Backtrace

Frame # Function Binary Source or offset Line
1
unicode_decode_utf8
/usr/lib64/libpython3.13.so.1.0 0x129aa1
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
2
CmdGetUnusedName(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3b2786
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
3
cfunction_call
/usr/lib64/libpython3.13.so.1.0 0x174cee
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
4
_PyObject_MakeTpCall
/usr/lib64/libpython3.13.so.1.0 0x13b0cb
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
5
_PyEval_EvalFrameDefault
/usr/lib64/libpython3.13.so.1.0 0x1560b5
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
6
_PyObject_CallFunctionVa
/usr/lib64/libpython3.13.so.1.0 0x220bce
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
7
PyObject_CallMethod
/usr/lib64/libpython3.13.so.1.0 0x22cc7a
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
8
PyMOL_Idle
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3d3b84
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
9
Cmd_Idle(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.13/site-packages/pymol/_cmd.cpython-313-x86_64-linux-gnu.so 0x3be28d
Build id: 335af7e1b682cd1f6bb9ee89ffe6ca357a8e5091 		-
10
cfunction_call
/usr/lib64/libpython3.13.so.1.0 0x174cee
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
11
_PyObject_MakeTpCall
/usr/lib64/libpython3.13.so.1.0 0x13b0cb
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
12
_PyEval_EvalFrameDefault
/usr/lib64/libpython3.13.so.1.0 0x152f06
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
13
method_vectorcall
/usr/lib64/libpython3.13.so.1.0 0x1adf62
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
14
PyQtSlot::invoke(void**, _object*, void*, bool) const
/usr/lib64/python3.13/site-packages/PyQt5/QtCore.abi3.so 0x1713b7
Build id: 7fec2f98d5a4416ff891965b15dc1535ba9c0e92 		-
15
PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)
/usr/lib64/python3.13/site-packages/PyQt5/QtCore.abi3.so 0x175b0e
Build id: 7fec2f98d5a4416ff891965b15dc1535ba9c0e92 		-
16
/usr/lib64/libQt5Core.so.5 0x250c83
Build id: a5e409e62fde3134c47b4bc14e8d2b05c455265c 		-
17
QTimer::timeout(QTimer::QPrivateSignal)
/usr/lib64/libQt5Core.so.5 0x2553fd
Build id: a5e409e62fde3134c47b4bc14e8d2b05c455265c 		-
18
sipQTimer::timerEvent(QTimerEvent*)
/usr/lib64/python3.13/site-packages/PyQt5/QtCore.abi3.so 0x5d143
Build id: 7fec2f98d5a4416ff891965b15dc1535ba9c0e92 		-
19
QObject::event(QEvent*)
/usr/lib64/libQt5Core.so.5 0x248a7f
Build id: a5e409e62fde3134c47b4bc14e8d2b05c455265c 		-
20
sipQTimer::event(QEvent*)
/usr/lib64/python3.13/site-packages/PyQt5/QtCore.abi3.so 0x548c3
Build id: 7fec2f98d5a4416ff891965b15dc1535ba9c0e92 		-
21
QApplicationPrivate::notify_helper(QObject*, QEvent*)
/usr/lib64/libQt5Widgets.so.5 0x40c35
Build id: 5a37e82495a635f896791c2d1bf58392fff7d881 		-
22
sipQApplication::notify(QObject*, QEvent*)
/usr/lib64/python3.13/site-packages/PyQt5/QtWidgets.abi3.so 0x279306
Build id: 2c586cb22d1b650ac0ced3ae742f16e8a192089c 		-
23
QCoreApplication::notifyInternal2(QObject*, QEvent*)
/usr/lib64/libQt5Core.so.5 0x21bf78
Build id: a5e409e62fde3134c47b4bc14e8d2b05c455265c 		-
24
QTimerInfoList::activateTimers()
/usr/lib64/libQt5Core.so.5 0x26fc8e
Build id: a5e409e62fde3134c47b4bc14e8d2b05c455265c 		-
25
/usr/lib64/libQt5Core.so.5 0x270629
Build id: a5e409e62fde3134c47b4bc14e8d2b05c455265c 		-
26
g_main_context_dispatch_unlocked.lto_priv.0
/usr/lib64/libglib-2.0.so.0 0x4028c
Build id: 22d79f4920ad3a59cb8611276e6b6b95da3b654b 		-
27
g_main_context_iterate_unlocked.isra.0
/usr/lib64/libglib-2.0.so.0 0xa08b8
Build id: 22d79f4920ad3a59cb8611276e6b6b95da3b654b 		-
28
g_main_context_iteration
/usr/lib64/libglib-2.0.so.0 0x41783
Build id: 22d79f4920ad3a59cb8611276e6b6b95da3b654b 		-
29
QEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/usr/lib64/libQt5Core.so.5 0x2709ed
Build id: a5e409e62fde3134c47b4bc14e8d2b05c455265c 		-
30
QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>)
/usr/lib64/libQt5Core.so.5 0x21a8db
Build id: a5e409e62fde3134c47b4bc14e8d2b05c455265c 		-
31
QCoreApplication::exec()
/usr/lib64/libQt5Core.so.5 0x222d46
Build id: a5e409e62fde3134c47b4bc14e8d2b05c455265c 		-
32
meth_QApplication_exec_.lto_priv.0
/usr/lib64/python3.13/site-packages/PyQt5/QtWidgets.abi3.so 0x2742c5
Build id: 2c586cb22d1b650ac0ced3ae742f16e8a192089c 		-
33
cfunction_call
/usr/lib64/libpython3.13.so.1.0 0x174cee
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
34
_PyObject_MakeTpCall
/usr/lib64/libpython3.13.so.1.0 0x13b0cb
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
35
_PyEval_EvalFrameDefault
/usr/lib64/libpython3.13.so.1.0 0x1560b5
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
36
PyEval_EvalCode
/usr/lib64/libpython3.13.so.1.0 0x22462b
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
37
run_eval_code_obj
/usr/lib64/libpython3.13.so.1.0 0x247740
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
38
run_mod
/usr/lib64/libpython3.13.so.1.0 0x241963
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
39
pyrun_file
/usr/lib64/libpython3.13.so.1.0 0x262cd6
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
40
_PyRun_SimpleFileObject
/usr/lib64/libpython3.13.so.1.0 0x2623bf
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
41
_PyRun_AnyFileObject
/usr/lib64/libpython3.13.so.1.0 0x2621e1
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
42
Py_RunMain
/usr/lib64/libpython3.13.so.1.0 0x25a828
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
43
Py_BytesMain
/usr/lib64/libpython3.13.so.1.0 0x21379c
Build id: ee810d2c6079e3ed37420ec6a547bc2582495e99 		-
44
__libc_start_call_main
/usr/lib64/libc.so.6 0x3248
Build id: f83d43b9b4b0ed5c2bd0a1613bf33e08ee054c93 		-
45
__libc_start_main@@GLIBC_2.34
/usr/lib64/libc.so.6 0x330b
Build id: f83d43b9b4b0ed5c2bd0a1613bf33e08ee054c93 		-
46
_start
/usr/bin/python3.13 0x1095
Build id: a2aa57a496e96b8651dc73c8ce58be9f06fed3ff 		-