Crash in _PyObject_Malloc

Similar reports
Problem #730318
Component
pymol
Last affected version
0:2.5.0-10.fc40
Executable
/usr/bin/python3.12
Error name
SIGSEGV 11
First occurrence
2026-05-06
Last occurrence
2026-09-22
Unique reports
2
Quality
-100

Statistics

Operating system Unique / Total count
Fedora 40 2 / 2
Operating system Count
Fedora 40 2
Architecture Count
x86_64 2
Related packages Count
pymol 2
 0:2.5.0-10.fc40 2
openblas-openmp 2
 0:0.3.26-4.fc40 2
flexiblas-netlib 2
 0:3.4.5-1.fc40 2
Show more… (3)
libgfortran 2
 0:14.2.1-3.fc40 2
python3-numpy 2
 1:1.26.4-3.fc40 2
python3 2
 0:3.12.10-2.fc40 2

Packages names with count less than the total count of reports are most probably not the cause of the problem.

History

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Monthly:

No reports in the last 20 days.

History

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No reports in the last 20 days.


Backtrace

Frame # Function Binary Source or offset Line
1
_PyObject_Malloc
/lib64/libpython3.12.so.1.0 0x156d4f
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
2
PyUnicode_New
/lib64/libpython3.12.so.1.0 0x15d19d
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
3
unicode_decode_utf8
/lib64/libpython3.12.so.1.0 0x15c3ea
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
4
CmdGetUnusedName(_object*, _object*) [clone .lto_priv.0]
/usr/lib64/python3.12/site-packages/pymol/_cmd.cpython-312-x86_64-linux-gnu.so 0x3ac4c6
Build id: d341423c4a4ea070b67bd2cf72a637a28335360c 		-
5
cfunction_call
/lib64/libpython3.12.so.1.0 0x18c068
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
6
_PyObject_MakeTpCall
/lib64/libpython3.12.so.1.0 0x1663d6
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
7
_PyEval_EvalFrameDefault
/lib64/libpython3.12.so.1.0 0x170ba5
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
8
method_vectorcall
/lib64/libpython3.12.so.1.0 0x1aa252
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
9
PyQtSlot::invoke(void**, _object*, void*, bool) const
/usr/lib64/python3.12/site-packages/PyQt5/QtCore.abi3.so 0x1b93f7
Build id: ffd4e40e6819c103563a1eecf4df651fe7f0ed5b 		-
10
PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**)
/usr/lib64/python3.12/site-packages/PyQt5/QtCore.abi3.so 0x1bdb4e
Build id: ffd4e40e6819c103563a1eecf4df651fe7f0ed5b 		-
11
void doActivate<false>(QObject*, int, void**)
/lib64/libQt5Core.so.5 0x2e9cc3
Build id: 9a8d7b1f8367aa8f6901573319fb56caee93f9a9 		-
12
QAction::triggered(bool)
/lib64/libQt5Widgets.so.5 0x1855f4
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
13
QAction::activate(QAction::ActionEvent)
/lib64/libQt5Widgets.so.5 0x18846c
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
14
QMenuPrivate::activateCausedStack(QVector<QPointer<QWidget> > const&, QAction*, QAction::ActionEvent, bool)
/lib64/libQt5Widgets.so.5 0x321152
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
15
QMenuPrivate::activateAction(QAction*, QAction::ActionEvent, bool)
/lib64/libQt5Widgets.so.5 0x3292d2
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
16
QWidget::event(QEvent*)
/lib64/libQt5Widgets.so.5 0x1d1598
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
17
QApplicationPrivate::notify_helper(QObject*, QEvent*)
/lib64/libQt5Widgets.so.5 0x18cc35
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
18
QApplication::notify(QObject*, QEvent*)
/lib64/libQt5Widgets.so.5 0x1953ef
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
19
sipQApplication::notify(QObject*, QEvent*)
/usr/lib64/python3.12/site-packages/PyQt5/QtWidgets.abi3.so 0x301306
Build id: dfeb36d24596dff78a57aeccc54f2468da6232b0 		-
20
QCoreApplication::notifyInternal2(QObject*, QEvent*)
/lib64/libQt5Core.so.5 0x2b4fb8
Build id: 9a8d7b1f8367aa8f6901573319fb56caee93f9a9 		-
21
QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer<QWidget>&, bool, bool)
/lib64/libQt5Widgets.so.5 0x19326d
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
22
QWidgetWindow::handleMouseEvent(QMouseEvent*)
/lib64/libQt5Widgets.so.5 0x1ec7cd
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
23
QWidgetWindow::event(QEvent*)
/lib64/libQt5Widgets.so.5 0x1ef65f
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
24
QApplicationPrivate::notify_helper(QObject*, QEvent*)
/lib64/libQt5Widgets.so.5 0x18cc35
Build id: 72abf931d2d38e667637d32f516b626876febb5f 		-
25
sipQApplication::notify(QObject*, QEvent*)
/usr/lib64/python3.12/site-packages/PyQt5/QtWidgets.abi3.so 0x301306
Build id: dfeb36d24596dff78a57aeccc54f2468da6232b0 		-
26
QCoreApplication::notifyInternal2(QObject*, QEvent*)
/lib64/libQt5Core.so.5 0x2b4fb8
Build id: 9a8d7b1f8367aa8f6901573319fb56caee93f9a9 		-
27
QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*)
/lib64/libQt5Gui.so.5 0x15d3b7
Build id: a26e2b884e355dc10f9ee50bc76f60ebe69654c0 		-
28
QWindowSystemInterface::sendWindowSystemEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQt5Gui.so.5 0x139d5c
Build id: a26e2b884e355dc10f9ee50bc76f60ebe69654c0 		-
29
xcbSourceDispatch(_GSource*, int (*)(void*), void*)
/lib64/libQt5XcbQpa.so.5 0x6bb96
Build id: 8ebedca5d50c86030efe02e7877d610a64f0d197 		-
30
g_main_context_dispatch_unlocked.lto_priv.0
/lib64/libglib-2.0.so.0 0x5d02c
Build id: c1b2ab1d795f60de663adaf74140f09f2b2fd034 		-
31
g_main_context_iterate_unlocked.isra.0
/lib64/libglib-2.0.so.0 0xbee20
Build id: c1b2ab1d795f60de663adaf74140f09f2b2fd034 		-
32
g_main_context_iteration
/lib64/libglib-2.0.so.0 0x5e503
Build id: c1b2ab1d795f60de663adaf74140f09f2b2fd034 		-
33
QEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQt5Core.so.5 0x309a2d
Build id: 9a8d7b1f8367aa8f6901573319fb56caee93f9a9 		-
34
QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>)
/lib64/libQt5Core.so.5 0x2b391b
Build id: 9a8d7b1f8367aa8f6901573319fb56caee93f9a9 		-
35
QCoreApplication::exec()
/lib64/libQt5Core.so.5 0x2bbd86
Build id: 9a8d7b1f8367aa8f6901573319fb56caee93f9a9 		-
36
meth_QApplication_exec_.lto_priv.0
/usr/lib64/python3.12/site-packages/PyQt5/QtWidgets.abi3.so 0x2fc2c5
Build id: dfeb36d24596dff78a57aeccc54f2468da6232b0 		-
37
cfunction_call
/lib64/libpython3.12.so.1.0 0x18c068
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
38
_PyObject_MakeTpCall
/lib64/libpython3.12.so.1.0 0x1663d6
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
39
_PyEval_EvalFrameDefault
/lib64/libpython3.12.so.1.0 0x170ba5
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
40
PyEval_EvalCode
/lib64/libpython3.12.so.1.0 0x1f7484
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
41
run_eval_code_obj
/lib64/libpython3.12.so.1.0 0x235a6a
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
42
run_mod
/lib64/libpython3.12.so.1.0 0x230a2e
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
43
pyrun_file
/lib64/libpython3.12.so.1.0 0x22d3a3
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
44
_PyRun_SimpleFileObject
/lib64/libpython3.12.so.1.0 0x22d05c
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
45
_PyRun_AnyFileObject
/lib64/libpython3.12.so.1.0 0x22cdbf
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
46
Py_RunMain
/lib64/libpython3.12.so.1.0 0x2293ad
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
47
Py_BytesMain
/lib64/libpython3.12.so.1.0 0x1e07fc
Build id: c4fa2f65899ce83b5286d536fa74e16c07543c06 		-
48
__libc_start_call_main
/lib64/libc.so.6 0x2a088
Build id: fc3b3c4da3283cd44c006682a30b9df3242de053 		-
49
__libc_start_main@@GLIBC_2.34
/lib64/libc.so.6 0x2a14b
Build id: fc3b3c4da3283cd44c006682a30b9df3242de053 		-
50
_start
/usr/bin/python3.12 0x1095
Build id: c9a14dacf299c9fe6f8152845b28c6309b1995c1 		-