Crash in spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.0]

Similar reports
Problem #714159
Component
gromacs
Last affected version
0:2022.3-3.fc38
Executable
/usr/bin/gmx
Error name
SIGSEGV 11
First occurrence
2023-04-06
Last occurrence
2026-08-31
Unique reports
5
Quality
-30

Graphs

Statistics

Operating system Unique / Total count
Fedora 37 1 / 1
Fedora 38 5 / 9
Operating system Count
Fedora 38 9
Fedora 37 1
Architecture Count
x86_64 10
Related packages Count
gromacs 9
 0:2022.3-3.fc38 9
openblas-openmp 6
 0:0.3.21-4.fc38 6

Packages names with count less than the total count of reports are most probably not the cause of the problem.

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Backtrace

Frame # Function Binary Source or offset Line
1
spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.0]
/lib64/libgromacs.so.7 0xaa7de8
Build id: 282af6edc82e0cc7ee1af1f963724444d6501e27 		-
2
GOMP_parallel
/lib64/libgomp.so.1 0x14766
Build id: 346970d951849ddcf993d74cbeec89b9edd1d05a 		-
3
spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int)
/lib64/libgromacs.so.7 0xaaa9a2
Build id: 282af6edc82e0cc7ee1af1f963724444d6501e27 		-
4
gmx_pme_do(gmx_pme_t*, gmx::ArrayRef<gmx::BasicVector<float> const>, gmx::ArrayRef<gmx::BasicVector<float> >, gmx::ArrayRef<float const>, gmx::ArrayRef<float const>, gmx::ArrayRef<float const>, gmx::ArrayRef<float const>, gmx::ArrayRef<float const>, gmx::ArrayRef<float const>, float const (*) [3], t_commrec const*, int, int, t_nrnb*, gmx_wallcycle*, float (*) [3], float (*) [3], float*, float*, float, float, float*, float*, gmx::StepWorkload const&)
/lib64/libgromacs.so.7 0xab3624
Build id: 282af6edc82e0cc7ee1af1f963724444d6501e27 		-
5
CpuPpLongRangeNonbondeds::calculate(gmx_pme_t*, t_commrec const*, gmx::ArrayRef<gmx::BasicVector<float> const>, gmx::ForceWithVirial*, gmx_enerdata_t*, float const (*) [3], gmx::ArrayRef<float const>, gmx::ArrayRef<gmx::BasicVector<float> const>, gmx::StepWorkload const&, DDBalanceRegionHandler const&)
/lib64/libgromacs.so.7 0x9a513e
Build id: 282af6edc82e0cc7ee1af1f963724444d6501e27 		-
6
do_force(_IO_FILE*, t_commrec const*, gmx_multisim_t const*, t_inputrec const&, gmx::Awh*, gmx_enfrot*, gmx::ImdSession*, pull_t*, long, t_nrnb*, gmx_wallcycle*, gmx_localtop_t const*, float const (*) [3], gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, history_t const*, gmx::ForceBuffersView*, float (*) [3], t_mdatoms const*, gmx_enerdata_t*, gmx::ArrayRef<float const>, t_forcerec*, gmx::MdrunScheduleWorkload*, gmx::VirtualSitesHandler*, float*, double, gmx_edsam*, CpuPpLongRangeNonbondeds*, int, DDBalanceRegionHandler const&)
/lib64/libgromacs.so.7 0x9ee3ba
Build id: 282af6edc82e0cc7ee1af1f963724444d6501e27 		-
7
gmx::LegacySimulator::do_md()
/lib64/libgromacs.so.7 0xafbbb6
Build id: 282af6edc82e0cc7ee1af1f963724444d6501e27 		-
8
gmx::Mdrunner::mdrunner()
/lib64/libgromacs.so.7 0xb20c5d
Build id: 282af6edc82e0cc7ee1af1f963724444d6501e27 		-
9
gmx::gmx_mdrun(tmpi_comm_*, gmx_hw_info_t const&, int, char**) [clone .constprop.0]
/usr/bin/gmx 0x244c4
Build id: ba683af43ec5917ec4f3f3e795cf0aa8e610ddc0 		-
10
gmx::gmx_mdrun(int, char**)
/usr/bin/gmx 0xc988
Build id: ba683af43ec5917ec4f3f3e795cf0aa8e610ddc0 		-
11
gmx::CommandLineModuleManager::run(int, char**)
/lib64/libgromacs.so.7 0x4cca22
Build id: 282af6edc82e0cc7ee1af1f963724444d6501e27 		-
12
main
/usr/bin/gmx 0xae3a
Build id: ba683af43ec5917ec4f3f3e795cf0aa8e610ddc0 		-
13
__libc_start_call_main
/lib64/libc.so.6 0x27510
Build id: 81daba31ee66dbd63efdc4252a872949d874d136 		-
14
__libc_start_main@@GLIBC_2.34
/lib64/libc.so.6 0x275c9
Build id: 81daba31ee66dbd63efdc4252a872949d874d136 		-
15
_start
/usr/bin/gmx 0xaf15
Build id: ba683af43ec5917ec4f3f3e795cf0aa8e610ddc0 		-