Crash in __pthread_kill_implementation

Similar reports
Problem #550175
Component
rstudio
Last affected version
0:2023.09.1+494-2.fc39
Executable
/usr/libexec/rstudio/bin/rsession
Error name
SIGABRT 6
First occurrence
2023-11-23
Last occurrence
2023-11-23
Unique reports
1
Quality
-60

Statistics

Operating system Unique / Total count
Fedora 39 1 / 5
Operating system Count
Fedora 39 5
Architecture Count
x86_64 5
Related packages Count
rstudio 5
 0:2023.09.1+494-2.fc39 5
R-stringi 5
 0:1.7.8-6.fc39 5

Packages names with count less than the total count of reports are most probably not the cause of the problem.

History

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No reports in the last 20 days.

No reports in the last 20 weeks.

History

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No reports in the last 20 days.

No reports in the last 20 weeks.


Backtrace

Frame # Function Binary Source or offset Line
1
__pthread_kill_implementation
/lib64/libc.so.6 0x90834
Build id: 651b2bed7ecaf18098a63b8f10299821749766e6 		-
2
raise
/lib64/libc.so.6 0x3e8ee
Build id: 651b2bed7ecaf18098a63b8f10299821749766e6 		-
3
abort
/lib64/libc.so.6 0x268ff
Build id: 651b2bed7ecaf18098a63b8f10299821749766e6 		-
4
__gnu_debug::_Safe_sequence_base::_M_get_mutex()
/lib64/libstdc++.so.6 0xdf1a0
Build id: 27b3675e787f69e99bd13c6392f7c9a9f403c49d 		-
5
clustalw::FileReader::readCharacterSeqs(clustalw::Alignment*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, ClustalWInput*)
/home/juan/R/x86_64-redhat-linux-gnu-library/4.3/msa/libs/msa.so 0x6d1b3
Build id: 882982467301e690e2569e5a668a749d59e6e7af 		-
6
clustalw::Clustal::commandLineReadSeq(int, ClustalWInput*)
/home/juan/R/x86_64-redhat-linux-gnu-library/4.3/msa/libs/msa.so 0xe26f4
Build id: 882982467301e690e2569e5a668a749d59e6e7af 		-
7
clustalw::CommandLineParser::run(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >*, bool, ClustalWInput*, ClustalWOutput*)
/home/juan/R/x86_64-redhat-linux-gnu-library/4.3/msa/libs/msa.so 0x93a93
Build id: 882982467301e690e2569e5a668a749d59e6e7af 		-
8
clustalw::RClustalWMain::run(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, ClustalWInput*, ClustalWOutput*)
/home/juan/R/x86_64-redhat-linux-gnu-library/4.3/msa/libs/msa.so 0xe6e84
Build id: 882982467301e690e2569e5a668a749d59e6e7af 		-
9
RClustalW
/home/juan/R/x86_64-redhat-linux-gnu-library/4.3/msa/libs/msa.so 0xeec30
Build id: 882982467301e690e2569e5a668a749d59e6e7af 		-
10
R_doDotCall
/usr/lib64/R/lib/libR.so 0xffeee
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
11
do_dotcall
/usr/lib64/R/lib/libR.so 0x100610
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
12
bcEval.lto_priv.0
/usr/lib64/R/lib/libR.so 0x1406db
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
13
Rf_eval
/usr/lib64/R/lib/libR.so 0x12e6d8
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
14
R_execClosure
/usr/lib64/R/lib/libR.so 0x12d313
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
15
Rf_applyClosure
/usr/lib64/R/lib/libR.so 0x12e420
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
16
bcEval.lto_priv.0
/usr/lib64/R/lib/libR.so 0x1400bb
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
17
Rf_eval
/usr/lib64/R/lib/libR.so 0x12e6d8
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
18
R_execClosure
/usr/lib64/R/lib/libR.so 0x12d313
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
19
Rf_applyClosure
/usr/lib64/R/lib/libR.so 0x12e420
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
20
Rf_eval
/usr/lib64/R/lib/libR.so 0x12e820
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
21
do_set
/usr/lib64/R/lib/libR.so 0x13480c
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
22
Rf_eval
/usr/lib64/R/lib/libR.so 0x12eb94
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
23
Rf_ReplIteration
/usr/lib64/R/lib/libR.so 0x18ef21
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
24
R_ReplConsole
/usr/lib64/R/lib/libR.so 0x18f2e1
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
25
run_Rmainloop
/usr/lib64/R/lib/libR.so 0x18f3a9
Build id: 14b60b9781d0b1a804432032a1608bf92ac1e7fb 		-
26
rstudio::r::session::run(rstudio::r::session::ROptions const&, rstudio::r::session::RCallbacks const&)
/usr/libexec/rstudio/bin/rsession 0x87b9cb
Build id: 795a9d014f370ac4d838ae577149c4ce1b886e4a 		-
27
main
/usr/libexec/rstudio/bin/rsession 0x1b8d68
Build id: 795a9d014f370ac4d838ae577149c4ce1b886e4a 		-
28
__libc_start_call_main
/lib64/libc.so.6 0x2814a
Build id: 651b2bed7ecaf18098a63b8f10299821749766e6 		-
29
__libc_start_main@@GLIBC_2.34
/lib64/libc.so.6 0x2820b
Build id: 651b2bed7ecaf18098a63b8f10299821749766e6 		-
30
_start
/usr/libexec/rstudio/bin/rsession 0x1f3a55
Build id: 795a9d014f370ac4d838ae577149c4ce1b886e4a 		-