Crash in __pthread_kill_implementation

Similar reports
Problem #645334
Component
rstudio
Last affected version
0:2023.12.1+402-1.fc39
Executable
/usr/libexec/rstudio/bin/rsession
Error name
SIGABRT 6
First occurrence
2025-12-11
Last occurrence
2026-01-04
Unique reports
2
Quality
-54

Statistics

Operating system Unique / Total count
Fedora 39 2 / 5
Operating system Count
Fedora 39 5
Architecture Count
x86_64 5
Related packages Count
rstudio 5
 0:2023.12.1+402-1.fc39 5

Packages names with count less than the total count of reports are most probably not the cause of the problem.

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Backtrace

Frame # Function Binary Source or offset Line
1
__pthread_kill_implementation
/lib64/libc.so.6 0x90834
Build id: 7ea8d85df0e89b90c63ac7ed2b3578b2e7728756 		-
2
raise
/lib64/libc.so.6 0x3e8ee
Build id: 7ea8d85df0e89b90c63ac7ed2b3578b2e7728756 		-
3
abort
/lib64/libc.so.6 0x2698f
Build id: 7ea8d85df0e89b90c63ac7ed2b3578b2e7728756 		-
4
std::chrono::_V2::system_clock::now()
/lib64/libstdc++.so.6 0xd95b0
Build id: 135b17851e2f57f305c48a54822dfd08cdaf060e 		-
5
LDA_non_rev_opt(arma::Mat<unsigned int>&, std::vector<std::vector<std::vector<std::vector<unsigned int, std::allocator<unsigned int> >, std::allocator<std::vector<unsigned int, std::allocator<unsigned int> > > >, std::allocator<std::vector<std::vector<unsigned int, std::allocator<unsigned int> >, std::allocator<std::vector<unsigned int, std::allocator<unsigned int> > > > > >, std::allocator<std::vector<std::vector<std::vector<unsigned int, std::allocator<unsigned int> >, std::allocator<std::vector<unsigned int, std::allocator<unsigned int> > > >, std::allocator<std::vector<std::vector<unsigned int, std::allocator<unsigned int> >, std::allocator<std::vector<unsigned int, std::allocator<unsigned int> > > > > > > >&, std::vector<std::unordered_map<unsigned int, unsigned int, std::hash<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<unsigned int const, unsigned int> > >, std::allocator<std::unordered_map<unsigned int, unsigned int, std::hash<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<unsigned int const, unsigned int> > > > >&, std::vector<std::unordered_map<unsigned int, unsigned int, std::hash<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<unsigned int const, unsigned int> > >, std::allocator<std::unordered_map<unsigned int, unsigned int, std::hash<unsigned int>, std::equal_to<unsigned int>, std::allocator<std::pair<unsigned int const, unsigned int> > > > >&, arma::Col<double>&, arma::Col<unsigned int>, arma::Col<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, std::vector<unsigned int, std::allocator<unsigned int> >&, arma::Cube<double>&, arma::Cube<double>&, double&, bool const&, arma::Col<unsigned int> const&, arma::Col<unsigned int> const&, unsigned int const&, unsigned int const&, double const&, double const&, double const&, unsigned int const&, unsigned int const&, unsigned int const&, double const&, bool const&, unsigned int const&, arma::Col<unsigned int>&, arma::Col<unsigned int> const&)
/tmp/RtmpPIql5K/sourceCpp-x86_64-redhat-linux-gnu-1.1.0/sourcecpp_bc8a28cf22/sourceCpp_2.so 0x61fa6
Build id: 57d734890b34b771438017ef6a791f3671210c20 		-
6
LDA_fit(arma::Col<unsigned int> const&, arma::Col<unsigned int> const&, arma::Col<unsigned int> const&, arma::Col<unsigned int> const&, unsigned int const&, unsigned int const&, unsigned int const&, unsigned int const&, unsigned int const&, bool const&, bool const&, bool const&, bool const&, double const&, double const&, double const&, double const&, unsigned int const&, bool const&, bool const&, bool const&, unsigned int const&)
/tmp/RtmpPIql5K/sourceCpp-x86_64-redhat-linux-gnu-1.1.0/sourcecpp_bc8a28cf22/sourceCpp_2.so 0x6cd17
Build id: 57d734890b34b771438017ef6a791f3671210c20 		-
7
sourceCpp_1_LDA_fit
/tmp/RtmpPIql5K/sourceCpp-x86_64-redhat-linux-gnu-1.1.0/sourcecpp_bc8a28cf22/sourceCpp_2.so 0x6e1d6
Build id: 57d734890b34b771438017ef6a791f3671210c20 		-
8
R_doDotCall
/usr/lib64/R/lib/libR.so 0xffbe4
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
9
do_dotcall
/usr/lib64/R/lib/libR.so 0x100540
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
10
Rf_eval
/usr/lib64/R/lib/libR.so 0x12ee0c
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
11
R_execClosure
/usr/lib64/R/lib/libR.so 0x12d223
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
12
Rf_applyClosure
/usr/lib64/R/lib/libR.so 0x12e330
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
13
bcEval.lto_priv.0
/usr/lib64/R/lib/libR.so 0x144c92
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
14
Rf_eval
/usr/lib64/R/lib/libR.so 0x12e5e8
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
15
R_execClosure
/usr/lib64/R/lib/libR.so 0x12d223
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
16
Rf_applyClosure
/usr/lib64/R/lib/libR.so 0x12e330
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
17
Rf_eval
/usr/lib64/R/lib/libR.so 0x12e730
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
18
do_set
/usr/lib64/R/lib/libR.so 0x13472c
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
19
Rf_eval
/usr/lib64/R/lib/libR.so 0x12eac4
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
20
Rf_ReplIteration
/usr/lib64/R/lib/libR.so 0x18edd1
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
21
R_ReplConsole
/usr/lib64/R/lib/libR.so 0x18f191
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
22
run_Rmainloop
/usr/lib64/R/lib/libR.so 0x18f259
Build id: 79881c7287362b8bb769049f747c64fb829fa3a3 		-
23
rstudio::r::session::run(rstudio::r::session::ROptions const&, rstudio::r::session::RCallbacks const&)
/usr/libexec/rstudio/bin/rsession 0x88247b
Build id: 76b610b6f57e4ab2dc63ae62223fbd00594a7bd8 		-
24
main
/usr/libexec/rstudio/bin/rsession 0x1ba98e
Build id: 76b610b6f57e4ab2dc63ae62223fbd00594a7bd8 		-
25
__libc_start_call_main
/lib64/libc.so.6 0x2814a
Build id: 7ea8d85df0e89b90c63ac7ed2b3578b2e7728756 		-
26
__libc_start_main@@GLIBC_2.34
/lib64/libc.so.6 0x2820b
Build id: 7ea8d85df0e89b90c63ac7ed2b3578b2e7728756 		-
27
_start
/usr/libexec/rstudio/bin/rsession 0x1f5e65
Build id: 76b610b6f57e4ab2dc63ae62223fbd00594a7bd8 		-